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rVarBase
SNP Report
Basic Infomation
Name
rs3124996  
dbSNP
Location
chr:9,139337738
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1139057
1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11574908
1.00[JPT][hapmap]
rs12001608
1.00[JPT][hapmap]
rs3124994
1.00[CHB][hapmap];1.00[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
INPP5E
Proximal transcriptional regulation
SEC16A
Distal transcriptional regulation
SEC16A
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
INPP5E
Pritchard