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rVarBase
SNP Report
Basic Infomation
Name
rs3124994  
dbSNP
Location
chr:9,139295282
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1139057
1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11574908
1.00[JPT][hapmap]
rs12001608
1.00[JPT][hapmap]
rs3124996
1.00[CHB][hapmap];1.00[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
SNAPC4
Proximal transcriptional regulation
C9orf163
Distal transcriptional regulation
PHPT1
Distal transcriptional regulation
INPP5E
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
eQTL related gene
Source
CARD9
seeQTL
SDCCAG3
Pritchard
INPP5E
Pritchard
CARD9
Pritchard
INPP5E
SCAN