SNP Report
Basic Infomation
| Name | rs3026156 dbSNP |
|---|---|
| Location | chr:17,5389642 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11652692 | 1.00[CHB][hapmap] |
| rs11653654 | 1.00[CHB][hapmap] |
| rs11654668 | 1.00[CHB][hapmap] |
| rs12942931 | 1.00[CHB][hapmap] |
| rs16954715 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1805439 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1805448 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1805452 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1805456 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1805457 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1806245 | 1.00[CHB][hapmap] |
| rs55935197 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs61040463 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61260315 | 0.89[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6502865 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7214293 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73339275 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs73339288 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73341227 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73341251 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73341257 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73973808 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8066805 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs8068792 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8069315 | 1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs8077225 | 1.00[CHB][hapmap] |
| rs8079518 | 0.87[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8081387 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DERL2 | Proximal transcriptional regulation |
| MIS12 | Proximal transcriptional regulation |
| SFN | Distal transcriptional regulation |
| ENSG00000260475 | Distal transcriptional regulation |
| RIC8A | Distal transcriptional regulation |
| MGST1 | Distal transcriptional regulation |
| FOS | Distal transcriptional regulation |
| OIP5-AS1 | Distal transcriptional regulation |
| TK2 | Distal transcriptional regulation |
| ENSG00000223154 | Distal transcriptional regulation |
| UBE2S | Distal transcriptional regulation |
| UFD1L | Distal transcriptional regulation |
| CDC45 | Distal transcriptional regulation |
| EXOC1 | Distal transcriptional regulation |
| USP46 | Distal transcriptional regulation |
| USP46-AS1 | Distal transcriptional regulation |
| TNFRSF10B | Distal transcriptional regulation |
| NLRP1 | Distal transcriptional regulation |
| NUP88 | Distal transcriptional regulation |
| RPAIN | Distal transcriptional regulation |
| DHX33 | Distal transcriptional regulation |
| ENSG00000262099 | Distal transcriptional regulation |
| DERL2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014