SNP Report
Basic Infomation
| Name | rs3015963 dbSNP |
|---|---|
| Location | chr:11,65189792 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11545201 | 1.00[CHD][hapmap] |
| rs11545202 | 1.00[CHD][hapmap] |
| rs11548537 | 1.00[CEU][hapmap];1.00[CHD][hapmap] |
| rs12271652 | 1.00[CHD][hapmap] |
| rs472852 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs635411 | 0.83[AMR][1000 genomes] |
| rs674400 | 0.88[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7111083 | 0.86[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NEAT1 | Proximal transcriptional regulation |
| ENSG00000202077 | Distal transcriptional regulation |
| THRAP3 | Distal transcriptional regulation |
| BLCAP | Distal transcriptional regulation |
| CBR4 | Distal transcriptional regulation |
| ENSG00000251445 | Distal transcriptional regulation |
| MEPCE | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| THAP7 | Distal transcriptional regulation |
| THAP7-AS1 | Distal transcriptional regulation |
| ZBTB34 | Distal transcriptional regulation |
| HIST1H3B | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| ENSG00000260233 | Distal transcriptional regulation |
| SSSCA1 | Distal transcriptional regulation |
| FAM89B | Distal transcriptional regulation |
| EHBP1L1 | Distal transcriptional regulation |
| EIF1AD | Distal transcriptional regulation |
| BANF1 | Distal transcriptional regulation |
| LTBP3 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000173727 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| SCYL1 | Distal transcriptional regulation |
| MAP3K11 | Distal transcriptional regulation |
| PCNXL3 | Distal transcriptional regulation |
| FOSL1 | Distal transcriptional regulation |
| CFL1 | Distal transcriptional regulation |
| MUS81 | Distal transcriptional regulation |
| PLCG1 | Distal transcriptional regulation |
| THOC7-AS1 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| RELA | Distal transcriptional regulation |
| PELI3 | Distal transcriptional regulation |
| RNU1-1 | Distal transcriptional regulation |
| ENSG00000233396 | Distal transcriptional regulation |
| ENSG00000201558 | Distal transcriptional regulation |
| ACBD5 | Distal transcriptional regulation |
| ENSG00000262412 | Distal transcriptional regulation |
| PDLIM1 | Distal transcriptional regulation |
| HSPB1 | Distal transcriptional regulation |
| ZFP36L2 | Distal transcriptional regulation |
| IRF2BPL | Distal transcriptional regulation |
| ZNF217 | Distal transcriptional regulation |
| ENSG00000267280 | Distal transcriptional regulation |
| CTBP1 | Distal transcriptional regulation |
| CTBP1-AS1 | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| CDC42EP2 | Distal transcriptional regulation |
| CST6 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014