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rVarBase
SNP Report
Basic Infomation
Name
rs2902288  
dbSNP
Location
chr:10,101324365
Allele
C/G
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10458728
0.89[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1332102
0.84[ASW][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1360522
0.80[CHB][hapmap];0.82[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
SLC25A28
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
CBX4
SCAN
ZDHHC16
SCAN
TM9SF3
SCAN