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rVarBase
SNP Report
Basic Infomation
Name
rs1360522  
dbSNP
Location
chr:10,101325797
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10458728
0.89[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1332102
1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2902288
0.80[CHB][hapmap];0.82[JPT][hapmap]
rs7901824
0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
SLC25A28
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
C10orf62
SCAN