SNP Report
Basic Infomation
| Name | rs28479359 dbSNP |
|---|---|
| Location | chr:14,68246627 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10134763 | 0.85[AFR][1000 genomes] |
| rs10142186 | 0.82[AFR][1000 genomes] |
| rs13353140 | 1.00[AMR][1000 genomes] |
| rs17104697 | 0.85[AFR][1000 genomes] |
| rs17104702 | 1.00[AMR][1000 genomes] |
| rs17104818 | 1.00[AMR][1000 genomes] |
| rs28396172 | 0.81[AFR][1000 genomes] |
| rs28451245 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4272963 | 0.82[AFR][1000 genomes] |
| rs4902522 | 0.82[AFR][1000 genomes] |
| rs57348219 | 0.82[AFR][1000 genomes] |
| rs58112975 | 0.82[AFR][1000 genomes] |
| rs7143483 | 0.82[AFR][1000 genomes] |
| rs7149669 | 0.82[AFR][1000 genomes] |
| rs8009762 | 0.87[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFYVE26 | Proximal transcriptional regulation |
| ZFYVE26 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014