SNP Report
Basic Infomation
| Name | rs2757039 dbSNP |
|---|---|
| Location | chr:6,167370353 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1130033 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2247314 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2247315 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2247325 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs239933 | 0.83[ASN][1000 genomes] |
| rs2757041 | 0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3963512 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4710149 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4710154 | 0.81[EUR][1000 genomes] |
| rs6456143 | 0.83[ASN][1000 genomes] |
| rs7750593 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs933243 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9347170 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9355610 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9366078 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9459835 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RNASET2 | Proximal transcriptional regulation |
| ENSG00000249141 | Proximal transcriptional regulation |
| RNASET2 | Distal transcriptional regulation |
| ENSG00000227598 | Distal transcriptional regulation |
| FGFR1OP | Distal transcriptional regulation |
| MIR3939 | Distal transcriptional regulation |
| RPS6KA2 | Distal transcriptional regulation |
| RNASET2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| ENSG00000026297 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014