SNP Report
Basic Infomation
| Name | rs2247314 dbSNP |
|---|---|
| Location | chr:6,167370230 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10946205 | 0.80[ASN][1000 genomes] |
| rs1130033 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2247315 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2247325 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs239933 | 0.84[ASN][1000 genomes] |
| rs2757039 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2757041 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3963512 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4710149 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4710154 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6456143 | 0.84[ASN][1000 genomes] |
| rs7750593 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs933243 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9347170 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9355610 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9366078 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9459835 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RNASET2 | Proximal transcriptional regulation |
| ENSG00000249141 | Proximal transcriptional regulation |
| RNASET2 | Distal transcriptional regulation |
| ENSG00000227598 | Distal transcriptional regulation |
| FGFR1OP | Distal transcriptional regulation |
| MIR3939 | Distal transcriptional regulation |
| RPS6KA2 | Distal transcriptional regulation |
| RNASET2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014