SNP Report

Basic Infomation

Name	rs2727270 dbSNP
Location	chr:11,61603237
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs174533	1.00[YRI][hapmap]
rs174536	1.00[YRI][hapmap]
rs174537	1.00[YRI][hapmap]
rs174541	1.00[YRI][hapmap]
rs174545	1.00[YRI][hapmap]
rs174546	1.00[YRI][hapmap]
rs174547	1.00[YRI][hapmap]
rs174549	1.00[YRI][hapmap]
rs174550	1.00[YRI][hapmap]
rs174555	1.00[YRI][hapmap]
rs174556	1.00[YRI][hapmap]
rs174568	1.00[YRI][hapmap]
rs2072113	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2072114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2524296	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2524299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526678	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2526680	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2727263	0.93[ASN][1000 genomes]
rs2727265	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2727271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2845572	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2845573	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2845574	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2851682	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4246215	1.00[YRI][hapmap]
rs4564341	1.00[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
FADS2	Proximal transcriptional regulation
FADS2	Distal transcriptional regulation
FTH1	Distal transcriptional regulation
ENSG00000269089	Distal transcriptional regulation
FADS1	Distal transcriptional regulation
FADS2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)