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rVarBase
SNP Report
Basic Infomation
Name
rs2710886  
dbSNP
Location
chr:1,992084
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2245754
0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2488991
0.88[EUR][1000 genomes]
rs2710871
0.81[EUR][1000 genomes]
rs2710872
0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2799072
0.90[EUR][1000 genomes]
rs2799073
0.90[EUR][1000 genomes]
rs2799074
0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3121562
0.84[EUR][1000 genomes]
rs8014
0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000217801
Proximal transcriptional regulation
ENSG00000224969
Distal transcriptional regulation
ISG15
Distal transcriptional regulation
AGRN
Distal transcriptional regulation
HES4
Distal transcriptional regulation
ENSG00000231702
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)