SNP Report
Basic Infomation
| Name | rs2488991 dbSNP |
|---|---|
| Location | chr:1,994391 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2245754 | 0.88[EUR][1000 genomes] |
| rs2710871 | 0.89[EUR][1000 genomes] |
| rs2710872 | 0.92[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs2710886 | 0.88[EUR][1000 genomes] |
| rs2799072 | 0.87[EUR][1000 genomes] |
| rs2799073 | 0.87[EUR][1000 genomes] |
| rs2799074 | 0.89[EUR][1000 genomes] |
| rs3121562 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6657048 | 1.00[CHD][hapmap] |
| rs8014 | 0.88[EUR][1000 genomes] |
| rs9778201 | 1.00[CHD][hapmap] |
| rs9803031 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000217801 | Proximal transcriptional regulation |
| HES4 | Distal transcriptional regulation |
| ENSG00000224969 | Distal transcriptional regulation |
| ISG15 | Distal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
| SCNN1D | Distal transcriptional regulation |
| C1orf159 | Distal transcriptional regulation |
| KLHL17 | Distal transcriptional regulation |
| ENSG00000242590 | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| SAMD11 | Distal transcriptional regulation |
| ENSG00000231702 | Distal transcriptional regulation |
| CPSF3L | Distal transcriptional regulation |
| ENSG00000240731 | Distal transcriptional regulation |
| ACAP3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014