SNP Report
Basic Infomation
| Name | rs2710867 dbSNP |
|---|---|
| Location | chr:1,934099 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13302924 | 0.83[EUR][1000 genomes] |
| rs2005437 | 0.83[EUR][1000 genomes] |
| rs2341362 | 0.83[EUR][1000 genomes] |
| rs2710881 | 0.83[EUR][1000 genomes] |
| rs2799061 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2799063 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs28394749 | 0.83[EUR][1000 genomes] |
| rs28622096 | 0.83[EUR][1000 genomes] |
| rs3128112 | 0.83[EUR][1000 genomes] |
| rs35002855 | 0.83[EUR][1000 genomes] |
| rs4970351 | 0.83[EUR][1000 genomes] |
| rs4970403 | 0.83[EUR][1000 genomes] |
| rs6605060 | 0.83[EUR][1000 genomes] |
| rs6665000 | 0.83[EUR][1000 genomes] |
| rs6671243 | 0.83[EUR][1000 genomes] |
| rs9442609 | 0.83[EUR][1000 genomes] |
| rs9442610 | 0.84[EUR][1000 genomes] |
| rs9777703 | 0.83[EUR][1000 genomes] |
| rs9777939 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000223764 | Distal transcriptional regulation |
| SAMD11 | Distal transcriptional regulation |
| NOC2L | Distal transcriptional regulation |
| KLHL17 | Distal transcriptional regulation |
| PLEKHN1 | Distal transcriptional regulation |
| C1orf170 | Distal transcriptional regulation |
| ENSG00000217801 | Distal transcriptional regulation |
| ACAP3 | Distal transcriptional regulation |
| PUSL1 | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| B3GALT6 | Distal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| C1orf159 | Distal transcriptional regulation |
| ENSG00000224969 | Distal transcriptional regulation |
| ISG15 | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
| ENSG00000242590 | Distal transcriptional regulation |
| DVL1 | Distal transcriptional regulation |
| TNFRSF18 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014