SNP Report
Basic Infomation
| Name | rs268875 dbSNP |
|---|---|
| Location | chr:2,65495887 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10116 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs12104748 | 0.83[AMR][1000 genomes] |
| rs190577 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs268850 | 0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs268853 | 0.86[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs268857 | 0.82[AMR][1000 genomes] |
| rs268861 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs268862 | 1.00[ASW][hapmap];0.86[CEU][hapmap];0.89[GIH][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs268863 | 0.86[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs268864 | 1.00[ASW][hapmap];0.86[CEU][hapmap];0.89[GIH][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs268867 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs268868 | 1.00[ASW][hapmap];0.86[CEU][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs268870 | 0.86[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs268871 | 0.86[CEU][hapmap];0.89[GIH][hapmap];0.94[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs268878 | 0.86[CEU][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7558347 | 0.86[CEU][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACTR2 | Proximal transcriptional regulation |
| ACTR2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014