SNP Report
Basic Infomation
| Name | rs268873 dbSNP |
|---|---|
| Location | chr:2,65495073 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10116 | 0.89[AMR][1000 genomes] |
| rs12104748 | 0.89[AMR][1000 genomes] |
| rs190577 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs268850 | 0.89[AMR][1000 genomes] |
| rs268853 | 0.88[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs268855 | 0.84[AMR][1000 genomes] |
| rs268857 | 0.81[AMR][1000 genomes] |
| rs268861 | 0.89[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs268862 | 0.89[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs268863 | 0.89[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs268864 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs268867 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs268868 | 0.89[AMR][1000 genomes] |
| rs268870 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs268871 | 0.88[AMR][1000 genomes] |
| rs268878 | 0.89[AMR][1000 genomes] |
| rs7558347 | 0.88[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPRED2 | Distal transcriptional regulation |
| ACTR2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014