SNP Report
Basic Infomation
| Name | rs268133 dbSNP |
|---|---|
| Location | chr:2,65609550 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10186481 | 0.90[YRI][hapmap] |
| rs10186634 | 0.82[ASW][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs10192943 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs10193337 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10198510 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10205362 | 1.00[CEU][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10496125 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1561248 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17030233 | 0.89[ASW][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs17030248 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2196606 | 0.90[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs2217969 | 0.81[AFR][1000 genomes] |
| rs2661792 | 0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs268127 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs268128 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs268129 | 1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs268130 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs268134 | 0.81[LWK][hapmap];0.91[YRI][hapmap] |
| rs268135 | 0.91[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs268137 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs268140 | 0.91[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs73936454 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs73936469 | 0.84[AFR][1000 genomes] |
| rs7571298 | 1.00[ASW][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs7579551 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPRED2 | Proximal transcriptional regulation |
| ENSG00000232693 | Proximal transcriptional regulation |
| SPRED2 | Distal transcriptional regulation |
| ENSG00000204929 | Distal transcriptional regulation |
| ENSG00000232693 | Distal transcriptional regulation |
| SPRED2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014