SNP Report
Basic Infomation
| Name | rs10192943 dbSNP |
|---|---|
| Location | chr:2,65593408 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10186481 | 0.90[YRI][hapmap] |
| rs10186634 | 0.95[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10193337 | 0.95[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs10205362 | 0.87[YRI][hapmap] |
| rs10496125 | 0.95[YRI][hapmap] |
| rs1561248 | 0.95[YRI][hapmap] |
| rs17030233 | 0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17030248 | 0.95[YRI][hapmap] |
| rs2196606 | 0.90[YRI][hapmap] |
| rs268127 | 0.95[YRI][hapmap] |
| rs268129 | 0.95[YRI][hapmap] |
| rs268130 | 0.95[YRI][hapmap] |
| rs268133 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs268134 | 0.91[YRI][hapmap] |
| rs268135 | 0.91[YRI][hapmap] |
| rs268137 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs268140 | 0.91[YRI][hapmap] |
| rs73936469 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7571298 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7579551 | 0.81[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPRED2 | Distal transcriptional regulation |
| ENSG00000204929 | Distal transcriptional regulation |
| SPRED2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014