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rVarBase
SNP Report
Basic Infomation
Name
rs2603102  
dbSNP
Location
chr:12,50195149
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2603103
1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2603117
0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2720299
1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4439592
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs695061
1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
NCKAP5L
Proximal transcriptional regulation
NCKAP5L
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)