SNP Report
Basic Infomation
| Name | rs259965 dbSNP |
|---|---|
| Location | chr:20,57821556 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs183777 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes] |
| rs259956 | 0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs259958 | 0.85[AMR][1000 genomes] |
| rs259960 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs259961 | 1.00[JPT][hapmap] |
| rs259962 | 0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs259963 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs259964 | 0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs259966 | 0.92[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes] |
| rs259967 | 0.92[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs259969 | 0.91[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs259975 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs259976 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs380146 | 0.83[AFR][1000 genomes] |
| rs380147 | 0.87[EUR][1000 genomes] |
| rs451502 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7264992 | 0.84[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000225129 | Distal transcriptional regulation |
| ZNF831 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014