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rVarBase
SNP Report
Basic Infomation
Name
rs259958  
dbSNP
Location
chr:20,57828583
Allele
C/A
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs259956
0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs259960
0.90[AMR][1000 genomes]
rs259962
0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs259963
0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs259964
0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs259965
0.85[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
EDN3
Distal transcriptional regulation
ZNF831
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)