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rVarBase
SNP Report
Basic Infomation
Name
rs2376865  
dbSNP
Location
chr:20,30180085
Allele
T/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11905025
0.96[AFR][1000 genomes]
rs11905520
0.88[AFR][1000 genomes]
rs11905632
0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73232401
1.00[AMR][1000 genomes]
rs73233631
1.00[AMR][1000 genomes]
rs73233650
0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73233662
0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73235750
1.00[AMR][1000 genomes]
rs8126000
1.00[AMR][1000 genomes]
rs9712389
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
HM13-AS1
Distal transcriptional regulation
ID1
Distal transcriptional regulation
MIR3193
Distal transcriptional regulation
ENSG00000201770
Distal transcriptional regulation
HM13-IT1
Distal transcriptional regulation
HM13
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)