SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 15)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1047206	0.81[AMR][1000 genomes]
rs11600990	0.81[AMR][1000 genomes]
rs12785488	0.81[AMR][1000 genomes]
rs12788266	0.83[AMR][1000 genomes]
rs12793347	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12798408	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12808002	0.81[AMR][1000 genomes]
rs2276014	0.81[AMR][1000 genomes]
rs34906890	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35692796	0.81[AMR][1000 genomes]
rs41294396	0.81[AMR][1000 genomes]
rs500265	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71456304	0.81[AMR][1000 genomes]
rs71456309	0.81[AMR][1000 genomes]
rs71456310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RPS6KA4	Proximal transcriptional regulation
PPP1R14B	Distal transcriptional regulation
ENSG00000256940	Distal transcriptional regulation
TEX40	Distal transcriptional regulation
ESRRA	Distal transcriptional regulation
FERMT3	Distal transcriptional regulation
SF1	Distal transcriptional regulation
FKBP2	Distal transcriptional regulation
GPR137	Distal transcriptional regulation
CCDC88B	Distal transcriptional regulation
RPS6KA4	Distal transcriptional regulation
TRMT112	Distal transcriptional regulation
PRDX5	Distal transcriptional regulation
ENSG00000181908	Distal transcriptional regulation
RPS6KA4	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)