SNP Report
Basic Infomation
| Name | rs12798408 dbSNP |
|---|---|
| Location | chr:11,64121657 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1047206 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11600990 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12785488 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12788266 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12793347 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12808002 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2276014 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2289573 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs34906890 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35692796 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs41294396 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs500265 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs71456304 | 0.83[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs71456309 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs71456310 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7947143 | 0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPS6KA4 | Proximal transcriptional regulation |
| CCDC88B | Proximal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| DNAJC4 | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| CCDC88B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014