SNP Report
Basic Infomation
| Name | rs2245994 dbSNP |
|---|---|
| Location | chr:10,94085474 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10748577 | 0.92[ASN][1000 genomes] |
| rs10748578 | 0.94[ASN][1000 genomes] |
| rs10748579 | 0.94[ASN][1000 genomes] |
| rs11186914 | 0.86[ASN][1000 genomes] |
| rs11186915 | 0.86[ASN][1000 genomes] |
| rs2253904 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2254667 | 0.86[ASN][1000 genomes] |
| rs2265195 | 0.87[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2488793 | 0.88[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2771248 | 0.87[ASN][1000 genomes] |
| rs2771253 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2771265 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2798254 | 0.84[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4933720 | 0.86[ASN][1000 genomes] |
| rs4999831 | 0.83[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7094433 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs913649 | 0.87[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9943333 | 0.83[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MARCH5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014