SNP Report
Basic Infomation
| Name | rs2154977 dbSNP |
|---|---|
| Location | chr:11,63826709 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12284106 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2302262 | 1.00[EUR][1000 genomes] |
| rs320134 | 1.00[EUR][1000 genomes] |
| rs320135 | 1.00[EUR][1000 genomes] |
| rs320136 | 1.00[EUR][1000 genomes] |
| rs3897565 | 1.00[EUR][1000 genomes] |
| rs531658 | 1.00[EUR][1000 genomes] |
| rs56291692 | 1.00[AMR][1000 genomes] |
| rs57848355 | 1.00[AMR][1000 genomes] |
| rs58280473 | 1.00[AMR][1000 genomes] |
| rs59863478 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61431997 | 1.00[EUR][1000 genomes] |
| rs61760059 | 1.00[AMR][1000 genomes] |
| rs73498137 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73498145 | 1.00[EUR][1000 genomes] |
| rs747621 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000256824 | Proximal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
| ENSG00000256824 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014