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rVarBase
SNP Report
Basic Infomation
Name
rs2069633  
dbSNP
Location
chr:5,131413330
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17165710
1.00[GIH][hapmap]
rs17165711
1.00[AMR][1000 genomes]
rs17165713
1.00[GIH][hapmap]
rs17642130
1.00[AMR][1000 genomes]
rs41374148
1.00[MEX][hapmap]
rs6861343
1.00[MEX][hapmap]
rs6872876
1.00[MEX][hapmap]
rs743678
1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000253067
Proximal transcriptional regulation
ENSG00000233006
Distal transcriptional regulation
MIR3936
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
P4HA2
seeQTL