SNP Report
Basic Infomation
| Name | rs2064405 dbSNP |
|---|---|
| Location | chr:20,44777505 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12624690 | 0.80[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs12625346 | 0.84[EUR][1000 genomes] |
| rs13036554 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs13041203 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs13045771 | 0.94[GIH][hapmap] |
| rs16991114 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1883834 | 1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs1883835 | 1.00[CEU][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs2143698 | 0.84[EUR][1000 genomes] |
| rs2143699 | 1.00[CEU][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs34034261 | 0.94[EUR][1000 genomes] |
| rs35296663 | 0.84[EUR][1000 genomes] |
| rs35377099 | 0.86[EUR][1000 genomes] |
| rs3746821 | 1.00[CEU][hapmap];0.88[TSI][hapmap] |
| rs57147349 | 0.85[EUR][1000 genomes] |
| rs74174999 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014