SNP Report

Basic Infomation

Name	rs2058623 dbSNP
Location	chr:2,102986170
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 126)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1005042	0.81[JPT][hapmap]
rs1005043	0.81[JPT][hapmap]
rs1014286	0.81[JPT][hapmap]
rs10178436	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10182639	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs10183388	0.82[ASN][1000 genomes]
rs10189711	0.83[CHB][hapmap]
rs10190555	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10193407	0.83[CHB][hapmap]
rs10197284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10469840	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11123918	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs11123920	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs11123935	0.83[CHB][hapmap]
rs11465583	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677107	0.82[ASN][1000 genomes]
rs11685424	0.82[CHB][hapmap]
rs11690443	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs11694658	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12466380	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs12712135	0.91[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs12712141	0.83[CHB][hapmap]
rs12712145	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12712156	0.81[JPT][hapmap]
rs12996505	0.82[ASN][1000 genomes]
rs12996772	0.83[CHB][hapmap]
rs13015714	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1357471	0.81[JPT][hapmap]
rs1362349	0.83[CHB][hapmap]
rs1362350	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs1403550	0.82[CHB][hapmap]
rs1403551	0.82[CHB][hapmap]
rs1420088	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs1420102	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs1420103	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1420106	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1465321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468791	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1523203	0.83[CHB][hapmap]
rs1558622	0.82[CHB][hapmap]
rs1558627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1558650	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1558652	0.82[ASN][1000 genomes]
rs1568681	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1573895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807782	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1829849	0.81[JPT][hapmap]
rs1861246	0.87[CHB][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1997466	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs1997467	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs2001461	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2008157	0.81[JPT][hapmap]
rs2008159	0.81[JPT][hapmap]
rs2015478	0.81[JPT][hapmap]
rs2041740	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2041756	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2058622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2058658	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2058660	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2075185	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2110734	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2110735	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2160232	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2192757	0.83[CHB][hapmap]
rs2192758	0.83[CHB][hapmap]
rs2241117	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2270297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2272128	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3755267	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3755268	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3755274	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3771170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3817465	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3849364	0.81[JPT][hapmap]
rs3849365	0.81[JPT][hapmap]
rs3860444	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4090473	0.83[CHB][hapmap]
rs4142132	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4241211	0.81[JPT][hapmap]
rs4851007	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4851008	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4851009	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4851018	0.81[JPT][hapmap]
rs4851575	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4851584	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4851586	0.82[ASN][1000 genomes]
rs4851609	0.83[CHB][hapmap]
rs4851610	0.83[CHB][hapmap]
rs4851611	0.83[CHB][hapmap]
rs4851613	0.83[CHB][hapmap]
rs4851614	0.81[JPT][hapmap]
rs6543115	0.84[ASN][1000 genomes]
rs6543116	0.84[ASN][1000 genomes]
rs6543118	0.82[ASN][1000 genomes]
rs6543134	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6543137	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6706844	0.83[CHB][hapmap]
rs6708413	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6708949	0.82[CHB][hapmap]
rs6713618	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6714379	0.81[CHB][hapmap]
rs6716784	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6724322	0.83[CHB][hapmap]
rs6727306	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6729638	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6731154	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6733346	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6734736	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6737668	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6746271	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6750020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6750851	0.82[CHB][hapmap]
rs6750971	0.83[CHB][hapmap]
rs6753717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6755786	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs741285	0.81[JPT][hapmap]
rs7559479	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7562254	0.84[ASN][1000 genomes]
rs759382	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7597819	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7603250	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs917997	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs953934	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs971764	0.84[JPT][hapmap]
rs974389	0.83[CHB][hapmap]
rs990171	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
IL18R1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)