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rVarBase
SNP Report
Basic Infomation
Name
rs1997896  
dbSNP
Location
chr:14,68163157
Allele
A/T
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10483801
0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1120877
0.81[CEU][hapmap]
rs17836809
0.80[JPT][hapmap]
rs4902511
0.81[CEU][hapmap]
rs7149221
0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7160527
0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
RDH11
Proximal transcriptional regulation
VTI1B
Distal transcriptional regulation
ENSG00000258466
Distal transcriptional regulation
ENSG00000201529
Distal transcriptional regulation
ARG2
Distal transcriptional regulation
ENSG00000259648
Distal transcriptional regulation
RDH12
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)