SNP Report
Basic Infomation
| Name | rs198759 dbSNP |
|---|---|
| Location | chr:11,61352358 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230738 | 1.00[ASN][1000 genomes] |
| rs11230742 | 1.00[ASN][1000 genomes] |
| rs11230743 | 1.00[ASN][1000 genomes] |
| rs11820517 | 1.00[ASN][1000 genomes] |
| rs11826678 | 1.00[ASN][1000 genomes] |
| rs198758 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs198760 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57347248 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57825249 | 1.00[ASN][1000 genomes] |
| rs60449976 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73603 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs82969 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs887646 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs887647 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SYT7 | Proximal transcriptional regulation |
| ENSG00000250230 | Proximal transcriptional regulation |
| PPP1R32 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014