SNP Report
Basic Infomation
| Name | rs1939938 dbSNP |
|---|---|
| Location | chr:11,65131319 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 47)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1152621 | 1.00[EUR][1000 genomes] |
| rs11823327 | 1.00[EUR][1000 genomes] |
| rs11826426 | 1.00[EUR][1000 genomes] |
| rs11826954 | 1.00[EUR][1000 genomes] |
| rs1194339 | 1.00[EUR][1000 genomes] |
| rs17146805 | 1.00[EUR][1000 genomes] |
| rs1784102 | 1.00[EUR][1000 genomes] |
| rs1784221 | 1.00[EUR][1000 genomes] |
| rs2307266 | 1.00[EUR][1000 genomes] |
| rs34286323 | 1.00[EUR][1000 genomes] |
| rs4149823 | 0.82[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs4149824 | 1.00[EUR][1000 genomes] |
| rs4149828 | 0.85[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs4149835 | 1.00[EUR][1000 genomes] |
| rs4149839 | 0.85[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs4647581 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4647583 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4647585 | 1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4647598 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58771438 | 1.00[EUR][1000 genomes] |
| rs59598510 | 1.00[EUR][1000 genomes] |
| rs59646878 | 1.00[EUR][1000 genomes] |
| rs60315122 | 1.00[EUR][1000 genomes] |
| rs61072220 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61502141 | 1.00[EUR][1000 genomes] |
| rs73482220 | 1.00[EUR][1000 genomes] |
| rs73482233 | 1.00[EUR][1000 genomes] |
| rs73482248 | 1.00[EUR][1000 genomes] |
| rs73482250 | 1.00[EUR][1000 genomes] |
| rs73482254 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73482257 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73482268 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73482938 | 1.00[EUR][1000 genomes] |
| rs73482957 | 1.00[EUR][1000 genomes] |
| rs73482959 | 1.00[EUR][1000 genomes] |
| rs73482972 | 1.00[EUR][1000 genomes] |
| rs73482975 | 1.00[EUR][1000 genomes] |
| rs73484340 | 1.00[EUR][1000 genomes] |
| rs73484344 | 1.00[EUR][1000 genomes] |
| rs73484345 | 1.00[EUR][1000 genomes] |
| rs73484944 | 1.00[EUR][1000 genomes] |
| rs73484950 | 1.00[EUR][1000 genomes] |
| rs73484954 | 1.00[EUR][1000 genomes] |
| rs73484963 | 1.00[EUR][1000 genomes] |
| rs73484971 | 1.00[EUR][1000 genomes] |
| rs73484972 | 1.00[EUR][1000 genomes] |
| rs73484981 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000255478 | Proximal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| TIGD3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014