SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 9)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1156990	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1554008	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2175826	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2670642	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2670663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2716942	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4790787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55724398	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502870	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
NLRP1	Proximal transcriptional regulation
DERL2	Distal transcriptional regulation
MIS12	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)