SNP Report
Basic Infomation
| Name | rs1870141 dbSNP |
|---|---|
| Location | chr:10,82227630 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10749603 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10788627 | 0.80[CEU][hapmap] |
| rs10788640 | 0.86[CHB][hapmap];0.82[JPT][hapmap] |
| rs10887881 | 0.82[CEU][hapmap] |
| rs10887884 | 0.82[CEU][hapmap] |
| rs10887890 | 0.82[CEU][hapmap] |
| rs10887894 | 0.80[CEU][hapmap] |
| rs10887901 | 0.80[CEU][hapmap] |
| rs10887902 | 0.80[CEU][hapmap] |
| rs10887905 | 0.80[CEU][hapmap] |
| rs10887914 | 0.80[CEU][hapmap] |
| rs10887933 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11202957 | 0.80[CEU][hapmap] |
| rs11202959 | 0.80[CEU][hapmap] |
| rs11202963 | 0.83[CEU][hapmap] |
| rs11203034 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12245180 | 0.80[CEU][hapmap] |
| rs1870145 | 0.81[CEU][hapmap] |
| rs2125040 | 0.80[CEU][hapmap] |
| rs4933397 | 0.97[ASN][1000 genomes] |
| rs4934170 | 0.82[CEU][hapmap] |
| rs7077373 | 0.80[CEU][hapmap] |
| rs7078254 | 0.80[CEU][hapmap] |
| rs7085606 | 0.80[CEU][hapmap] |
| rs7086496 | 0.89[CEU][hapmap] |
| rs7088704 | 0.85[CHB][hapmap] |
| rs7095954 | 0.80[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014