SNP Report
Basic Infomation
| Name | rs10887933 dbSNP |
|---|---|
| Location | chr:10,82223767 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10749603 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10785884 | 0.80[TSI][hapmap] |
| rs10788640 | 0.86[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap] |
| rs10887881 | 0.81[CEU][hapmap] |
| rs10887884 | 0.81[CEU][hapmap] |
| rs10887890 | 0.81[CEU][hapmap] |
| rs11202963 | 0.82[CEU][hapmap] |
| rs11203034 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1870141 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1870145 | 0.81[CEU][hapmap] |
| rs4933397 | 0.94[ASN][1000 genomes] |
| rs4934170 | 0.81[CEU][hapmap] |
| rs7086496 | 0.89[CEU][hapmap] |
| rs7088704 | 0.85[CHB][hapmap] |
| rs882682 | 0.82[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014