SNP Report
Basic Infomation
| Name | rs1806232 dbSNP |
|---|---|
| Location | chr:17,5294787 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10445291 | 1.00[CHD][hapmap] |
| rs10445292 | 1.00[CHD][hapmap] |
| rs11078569 | 1.00[CHD][hapmap] |
| rs11078573 | 1.00[CHD][hapmap] |
| rs11650176 | 1.00[CHD][hapmap] |
| rs11653496 | 1.00[CHD][hapmap] |
| rs11653658 | 1.00[JPT][hapmap] |
| rs11654130 | 1.00[CHD][hapmap] |
| rs11656183 | 1.00[CHD][hapmap] |
| rs11656502 | 1.00[CHD][hapmap] |
| rs11657249 | 1.00[CHD][hapmap] |
| rs11657333 | 1.00[CHD][hapmap] |
| rs11657416 | 1.00[CHD][hapmap] |
| rs11657747 | 1.00[CHD][hapmap] |
| rs11658701 | 1.00[JPT][hapmap] |
| rs12950235 | 1.00[CHD][hapmap] |
| rs12952208 | 1.00[CHD][hapmap] |
| rs12952888 | 1.00[CHD][hapmap] |
| rs17637364 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs1806236 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2001363 | 1.00[CHD][hapmap] |
| rs3026108 | 1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs62072665 | 0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7207641 | 1.00[CHD][hapmap] |
| rs8079834 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NUP88 | Proximal transcriptional regulation |
| NUP88 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014