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rVarBase
SNP Report
Basic Infomation
Name
rs11653658  
dbSNP
Location
chr:17,5354204
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11658701
1.00[JPT][hapmap]
rs17637364
1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805436
0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1806232
1.00[JPT][hapmap]
rs1806236
1.00[JPT][hapmap]
rs3026108
1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs41315136
0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62075067
1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
DHX33
Proximal transcriptional regulation
C1QBP
Proximal transcriptional regulation
NUP88
Distal transcriptional regulation
RPAIN
Distal transcriptional regulation
DHX33
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)