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rVarBase
SNP Report
Basic Infomation
Name
rs1788113  
dbSNP
Location
chr:18,67565850
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10432241
0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs10513983
0.87[CHB][hapmap]
rs1788112
0.93[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1788243
0.87[CHB][hapmap]
rs2051322
0.81[CHB][hapmap]
rs2051323
0.81[CHB][hapmap]
rs2156247
0.88[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
CD226
Proximal transcriptional regulation
CD226
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)