SNP Report
Basic Infomation
| Name | rs17835116 dbSNP |
|---|---|
| Location | chr:14,69117178 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10438159 | 0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs11847037 | 0.81[AMR][1000 genomes] |
| rs11848320 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11850918 | 0.93[AMR][1000 genomes] |
| rs17756651 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17834977 | 1.00[MEX][hapmap];0.88[TSI][hapmap] |
| rs17835200 | 1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs2145156 | 0.81[EUR][1000 genomes] |
| rs55779318 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55877285 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56070472 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59978441 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs61987106 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs61987107 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61987114 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61987120 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61987122 | 0.98[EUR][1000 genomes] |
| rs8009601 | 0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs8017092 | 0.81[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CRYZ | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014