SNP Report
Basic Infomation
| Name | rs17755657 dbSNP |
|---|---|
| Location | chr:14,68880637 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1108007 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs11846360 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs11847185 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs11849044 | 0.95[CEU][hapmap];0.81[AMR][1000 genomes] |
| rs11849916 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs11850581 | 0.89[YRI][hapmap] |
| rs17105463 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs17105469 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs17105515 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs17105573 | 0.83[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs17105675 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs17755734 | 0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap] |
| rs17755752 | 0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs17828691 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs17828721 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs17828763 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs1956535 | 1.00[JPT][hapmap] |
| rs28405320 | 0.81[AMR][1000 genomes] |
| rs35190649 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3784121 | 1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs73276270 | 0.88[AFR][1000 genomes] |
| rs73276281 | 0.83[EUR][1000 genomes] |
| rs7359088 | 0.91[CEU][hapmap];0.92[GIH][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014