SNP Report
Basic Infomation
| Name | rs1108007 dbSNP |
|---|---|
| Location | chr:14,68867860 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11846360 | 1.00[JPT][hapmap] |
| rs11847185 | 1.00[JPT][hapmap] |
| rs11849916 | 1.00[JPT][hapmap] |
| rs17105278 | 0.85[CHB][hapmap] |
| rs17105463 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17105469 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17105515 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17105522 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17105675 | 1.00[JPT][hapmap] |
| rs17755657 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs17755734 | 1.00[JPT][hapmap] |
| rs17755752 | 1.00[JPT][hapmap] |
| rs17828685 | 1.00[AFR][1000 genomes] |
| rs17828691 | 1.00[JPT][hapmap] |
| rs17828721 | 1.00[JPT][hapmap] |
| rs17828763 | 1.00[JPT][hapmap] |
| rs1956535 | 1.00[JPT][hapmap] |
| rs1957570 | 0.85[CHB][hapmap] |
| rs35190649 | 0.88[ASN][1000 genomes] |
| rs3784121 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014