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rVarBase
SNP Report
Basic Infomation
Name
rs175102  
dbSNP
Location
chr:11,60810757
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12281060
1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs599856
0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7937064
0.83[EUR][1000 genomes]
rs7937068
0.82[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
TMEM109
Distal transcriptional regulation
ENSG00000256944
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
eQTL related gene
Source
TIMM10
SCAN
DNAJC4
SCAN
MS4A4A
SCAN
MS4A5
SCAN
CD6
SCAN
FTH1
SCAN