SNP Report
Basic Infomation
| Name | rs17490935 dbSNP |
|---|---|
| Location | chr:12,40669535 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17491013 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17491075 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17491110 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17491180 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17491368 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17491375 | 1.00[AMR][1000 genomes] |
| rs17491431 | 1.00[AMR][1000 genomes] |
| rs17491445 | 1.00[AMR][1000 genomes] |
| rs17491638 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17491645 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17519888 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17519964 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17519971 | 1.00[AMR][1000 genomes] |
| rs17520006 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs17520264 | 1.00[AMR][1000 genomes] |
| rs17520355 | 1.00[AMR][1000 genomes] |
| rs17520376 | 1.00[AMR][1000 genomes] |
| rs17520515 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014