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rVarBase
SNP Report
Basic Infomation
Name
rs17466444
dbSNP
Location
chr:12,40718678
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17443234
1.00[CHB][hapmap]
rs17443546
0.89[CHB][hapmap]
rs17444075
1.00[CHB][hapmap]
rs17445098
1.00[CHB][hapmap]
rs17466009
1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17466227
1.00[CHB][hapmap]
rs17467046
0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17484093
0.91[CHB][hapmap]
rs17490692
1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17490928
1.00[CHB][hapmap]
rs17492173
1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28365208
1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28365241
1.00[CHB][hapmap];0.89[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
MUC19
Distal transcriptional regulation
LRRK2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)