SNP Report
Basic Infomation
| Name | rs17123827 dbSNP |
|---|---|
| Location | chr:12,49992283 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128824 | 1.00[AMR][1000 genomes] |
| rs11169110 | 1.00[AMR][1000 genomes] |
| rs11169114 | 1.00[AMR][1000 genomes] |
| rs11169115 | 1.00[AMR][1000 genomes] |
| rs11169120 | 1.00[AMR][1000 genomes] |
| rs11169123 | 1.00[AMR][1000 genomes] |
| rs11609068 | 0.86[YRI][hapmap] |
| rs12297814 | 1.00[AMR][1000 genomes] |
| rs12299666 | 1.00[AMR][1000 genomes] |
| rs12299751 | 1.00[AMR][1000 genomes] |
| rs12300376 | 1.00[YRI][hapmap] |
| rs12306951 | 1.00[AMR][1000 genomes] |
| rs12310580 | 1.00[AMR][1000 genomes] |
| rs12312112 | 1.00[AMR][1000 genomes] |
| rs12313657 | 1.00[AMR][1000 genomes] |
| rs12313681 | 1.00[AMR][1000 genomes] |
| rs12314036 | 1.00[AMR][1000 genomes] |
| rs12315508 | 1.00[AMR][1000 genomes] |
| rs12317162 | 1.00[AMR][1000 genomes] |
| rs12320895 | 1.00[AMR][1000 genomes] |
| rs1317263 | 0.92[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17119738 | 0.85[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17123724 | 1.00[YRI][hapmap] |
| rs17123778 | 1.00[YRI][hapmap] |
| rs17123787 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17123924 | 1.00[AMR][1000 genomes] |
| rs9804867 | 1.00[AMR][1000 genomes] |
| rs9805090 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRPF40B | Proximal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| PRPF40B | RNA binding protein mediated regulation |
| FAM186B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| WDR54 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014