SNP Report
Basic Infomation
| Name | rs17123778 dbSNP |
|---|---|
| Location | chr:12,49948841 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11609068 | 0.86[YRI][hapmap] |
| rs12300376 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12306951 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12316175 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1317263 | 0.92[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs17119738 | 0.85[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs17123724 | 1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs17123729 | 1.00[EUR][1000 genomes] |
| rs17123787 | 1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs17123827 | 1.00[YRI][hapmap] |
| rs57625108 | 1.00[EUR][1000 genomes] |
| rs58039341 | 1.00[EUR][1000 genomes] |
| rs61438877 | 1.00[EUR][1000 genomes] |
| rs73305101 | 1.00[EUR][1000 genomes] |
| rs73306844 | 1.00[EUR][1000 genomes] |
| rs73306846 | 1.00[EUR][1000 genomes] |
| rs73306864 | 1.00[EUR][1000 genomes] |
| rs73306865 | 1.00[EUR][1000 genomes] |
| rs73306875 | 1.00[EUR][1000 genomes] |
| rs73306891 | 1.00[EUR][1000 genomes] |
| rs73309004 | 1.00[EUR][1000 genomes] |
| rs73309010 | 1.00[EUR][1000 genomes] |
| rs73309013 | 1.00[EUR][1000 genomes] |
| rs73309017 | 1.00[EUR][1000 genomes] |
| rs73309026 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNH3 | Proximal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
| DNAJC22 | Distal transcriptional regulation |
| KCNH3 | Distal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
| KCNH3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014