SNP Report
Basic Infomation
| Name | rs17107487 dbSNP |
|---|---|
| Location | chr:10,93973279 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11817048 | 0.84[AFR][1000 genomes] |
| rs57644484 | 0.91[AMR][1000 genomes] |
| rs61204062 | 1.00[AMR][1000 genomes] |
| rs61736268 | 0.89[AFR][1000 genomes] |
| rs6583806 | 0.82[AFR][1000 genomes] |
| rs7100640 | 0.87[ASW][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap] |
| rs724425 | 0.93[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs73318005 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs73318008 | 0.93[AFR][1000 genomes] |
| rs7901728 | 0.96[YRI][hapmap];0.91[AMR][1000 genomes] |
| rs7907392 | 0.83[AFR][1000 genomes] |
| rs7907691 | 0.87[ASW][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.86[YRI][hapmap] |
| rs7920742 | 0.87[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs7921368 | 0.80[AFR][1000 genomes] |
| rs9663787 | 0.82[AFR][1000 genomes] |
| rs9919492 | 0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NHP2P1 | Proximal transcriptional regulation |
| CPEB3 | Distal transcriptional regulation |
| MARCH5 | Distal transcriptional regulation |
| CPEB3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014