SNP Report
Basic Infomation
| Name | rs17107211 dbSNP |
|---|---|
| Location | chr:10,93690618 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10430650 | 0.80[ASN][1000 genomes] |
| rs10509640 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11186744 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12253972 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12254369 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12263532 | 0.80[ASN][1000 genomes] |
| rs12263639 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12266974 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12267763 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2048901 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4288679 | 0.80[ASN][1000 genomes] |
| rs4509678 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7071659 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7077506 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7901434 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7904900 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7915659 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7924014 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BTAF1 | Distal transcriptional regulation |
| BTAF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014