SNP Report
Basic Infomation
| Name | rs17038564 dbSNP |
|---|---|
| Location | chr:2,65496058 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10116 | 0.94[ASN][1000 genomes] |
| rs11677340 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs12463661 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs12467321 | 0.81[ASN][1000 genomes] |
| rs190577 | 0.96[ASN][1000 genomes] |
| rs268850 | 0.93[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs268853 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs268855 | 0.87[ASN][1000 genomes] |
| rs268861 | 0.88[ASN][1000 genomes] |
| rs268862 | 0.92[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs268863 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs268864 | 0.92[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs268867 | 0.87[ASN][1000 genomes] |
| rs268868 | 0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs268870 | 0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs268871 | 0.92[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs268878 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs3771098 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs3771099 | 0.92[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs3821185 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs60726151 | 0.81[ASN][1000 genomes] |
| rs60955726 | 0.85[ASN][1000 genomes] |
| rs7558347 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs7574628 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACTR2 | Proximal transcriptional regulation |
| ACTR2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014