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rVarBase
SNP Report
Basic Infomation
Name
rs16847632  
dbSNP
Location
chr:1,201036736
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11584527
0.86[MEX][hapmap]
rs12081096
0.86[MEX][hapmap]
rs12082403
1.00[CEU][hapmap]
rs2297899
1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297902
0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3820421
1.00[CEU][hapmap];1.00[TSI][hapmap]
rSNP related genes
Symbol
Regulation type
ASCL5
Distal transcriptional regulation
CACNA1S
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)