SNP Report
Basic Infomation
| Name | rs1602578 dbSNP |
|---|---|
| Location | chr:12,40613997 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10748014 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10878222 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10878224 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11175656 | 0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1844921 | 0.86[ASN][1000 genomes] |
| rs2131082 | 0.82[ASN][1000 genomes] |
| rs2131083 | 0.82[ASN][1000 genomes] |
| rs2638245 | 0.86[ASN][1000 genomes] |
| rs2638254 | 0.84[ASN][1000 genomes] |
| rs2708470 | 0.82[ASN][1000 genomes] |
| rs2708472 | 0.82[ASN][1000 genomes] |
| rs2708473 | 0.83[ASN][1000 genomes] |
| rs2708476 | 0.84[ASN][1000 genomes] |
| rs2708480 | 0.84[ASN][1000 genomes] |
| rs2708494 | 0.86[ASN][1000 genomes] |
| rs716231 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014